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PhenoGen Informatics
The site for quantitative genetics of the transcriptome.
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Select the download icon() to download data from any of the datasets below. For some data types multiple options may be available. For these types, a window displays that allows you to choose specific files.

RNA-Seq DNA-Seq Microarray Genomic Marker Publications
New RNA Sequencing Datasets Experimental Details/Downloads
Description Organism Strain Tissue Seq. Tech. RNA Type Read Type Genome
Versions
Experimental
Details
Raw Data Downloads Result Downloads
Whole Brain from ILS/ISS Parental Strains Mm ILS/ISS Whole Brain Illumina HiSeq 2000 smallRNA 51bp single-end reads mm10


RNA Sequencing BED/BAM Data Files
Organism Strain Tissue Seq. Tech. RNA Type Read Type Genome Versions .BED/.BAM Files
Rat BN-Lx/CubPrin Brain Illumina HiSeq2000 polyA+ (>200 nt) selected 100 bp paired-end Rn6, Rn5
Rat SHR/OlaIpcvPrin Brain Illumina HiSeq2000 polyA+ (>200 nt) selected 100 bp paired-end Rn6, Rn5
Rat BN-Lx/CubPrin Brain Illumina HiSeq2000 total RNA (>200 nt) after ribosomal RNA depletion 100 bp paired-end Rn6, Rn5
Rat SHR/OlaIpcvPrin Brain Illumina HiSeq2000 total RNA (>200 nt) after ribosomal RNA depletion 100 bp paired-end Rn6, Rn5
Rat BN-Lx/CubPrin Brain Illumina HiSeq2000 small RNA (<200 nt) selected 50 bp single-end Rn5
Rat SHR/OlaIpcvPrin Brain Illumina HiSeq2000 small RNA (<200 nt) selected 50 bp single-end Rn5
Rat BN-Lx/CubPrin Brain Helicos total RNA (>200 nt) after ribosomal RNA depletion ~33 bp single-end Rn5
Rat SHR/OlaIpcvPrin Brain Helicos total RNA (>200 nt) after ribosomal RNA depletion ~33 bp single-end Rn5
Rat BN-Lx/CubPrin Heart Illumina HiSeq2000 total RNA (>200 nt) after ribosomal RNA depletion stranded 100 bp paired-end Rn6
Rat SHR/OlaIpcvPrin Heart Illumina HiSeq2000 total RNA (>200 nt) after ribosomal RNA depletion stranded 100 bp paired-end Rn6
Rat BN-Lx/CubPrin Liver Illumina HiSeq2000 total RNA (>200 nt) after ribosomal RNA depletion stranded 100 bp paired-end Rn6
Rat SHR/OlaIpcvPrin Liver Illumina HiSeq2000 total RNA (>200 nt) after ribosomal RNA depletion stranded 100 bp paired-end Rn6
RNA-Seq Transcriptome Reconstruction
Organism Strains Tissue Assembled by .gtf Files
Rat BN-Lx/CubPrin,SHR/OlaIpcvPrin Whole Brain Cufflinks
Rat BN-Lx/CubPrin,SHR/OlaIpcvPrin Heart Cufflinks
Rat BN-Lx/CubPrin,SHR/OlaIpcvPrin Liver Cufflinks