PhenoGen Informatics
The site for quantitative genetics of the transcriptome.
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Current Datasets

Species Animal Type Source Details Panel Tissue Array Number of Strains Samples per
Strain
Where can I
access this data?
Rat Inbred Strains Adult Male HXB progenitors Whole Brain CodeLink Whole Genome 3
4-6 Custom Datasets
Rat Inbred Strains Adult Male 6 Inbred Strains Whole Brain Affymetrix Rat Exon Array 6
4 Custom Datasets
Rat Inbred Strains Adult Male 6 Inbred Strains Heart - left ventrical Affymetrix Rat Exon Array 6
4 Custom Datasets
Rat Inbred Strains Adult Male 6 Inbred Strains Liver Affymetrix Rat Exon Array 6
4 Custom Datasets
Rat Inbred Strains Adult Male 6 Inbred Strains Brown fat Affymetrix Rat Exon Array 6
4 Custom Datasets
Rat Inbred Strains Kupffer cells (fresh/cultured/MACS) 4 Inbred Strains Liver (cells) Affymetrix Rat Exon Array 4
4 Custom Datasets
Rat Inbred Strains Hepatic Stellate cells (fresh) 4 Inbred Strains Liver (cells) Affymetrix Rat Exon Array 4
4 Custom Datasets
Rat Inbred Strains Hepatocyte cells (fresh/cultured) 4 Inbred Strains Liver (cells) Affymetrix Rat Exon Array 4
4 Custom Datasets
Rat Inbred Strains Sinusoidal endothelial cells (fresh/cultured) 4 Inbred Strains Liver (cells) Affymetrix Rat Exon Array 4
4 Custom Datasets
Rat Recombinant Inbred Panels Adult Male HXB RI Whole Brain CodeLink Whole Genome 28
4-6 Precompiled Datasets,
Downloads,
Custom Datasets
Rat Recombinant Inbred Panels Adult Male HXB RI Whole Brain Affymetrix Rat Exon Array 23
3-4 Precompiled Datasets,
Genome/Transcriptome Browser,
Downloads
Rat Recombinant Inbred Panels Adult Male HXB RI Heart - left ventrical Affymetrix Rat Exon Array 23
3-4 Precompiled Datasets,
Genome/Transcriptome Browser,
Downloads
Rat Recombinant Inbred Panels Adult Male HXB RI Liver Affymetrix Rat Exon Array 23
3-4 Precompiled Datasets,
Genome/Transcriptome Browser,
Downloads
Rat Recombinant Inbred Panels Adult Male HXB RI Brown Fat Affymetrix Rat Exon Array 21
3-4 Precompiled Datasets,
Genome/Transcriptome Browser,
Downloads
Rat Selected Lines Adult Male 8 pairs Whole Brain CodeLink Whole Genome 8
4-6 Custom Datasets
Rat Selected Lines Adult Male 6 pairs Whole Brain Affymetrix Rat Exon Array 6
4-6 Custom Datasets
Rat HXB progenitors Adult Male Whole Brain RNA-Seq of total RNA(Helicos) 2
3/strain (70M reads/sample) Genome/Transcriptome Browser,
Downloads
Rat HXB progenitors Adult Male Whole Brain RNA-Seq of total RNA(Illumina) 2
3/strain (100M reads/sample) Genome/Transcriptome Browser,
Downloads
Rat HXB progenitors Adult Male Whole Brain RNA-Seq of PolyA+ RNA(Illumina) 2
3/strain (50M reads/sample) Genome/Transcriptome Browser,
Downloads
Rat HXB progenitors Adult Male Whole Brain RNA-Seq of small RNA(Illumina) 2
3/strain Genome/Transcriptome Browser,
Downloads
Rat HXB progenitors Adult Male Liver RNA-Seq of total RNA(Illumina) 2
3/strain (80M reads/sample) Genome/Transcriptome Browser
Rat HXB progenitors Adult Male Liver RNA-Seq of small RNA(Illumina) 2
2-3/strain Genome/Transcriptome Browser
Rat HXB progenitors Adult Male Heart RNA-Seq of total RNA(Illumina) 2
4/strain (90M reads/sample) Genome/Transcriptome Browser
Rat HXB progenitors Adult Male Heart RNA-Seq of small RNA(Illumina) 2
3/strain Genome/Transcriptome Browser
Rat HXB progenitors Adult Male Liver Full genome sequencing 4
2/strain Genome/Transcriptome Browser,
Downloads
Mouse Inbred Strains Adult Male 28 inbred strains Whole Brain Affymetrix Mouse 430 v2 28
4-6 Precompiled Datasets,
Downloads,
Custom Datasets
Mouse Inbred Strains Adult Male 4 inbred strains Whole Brain Affymetrix Mouse Exon Array 4
3-36 Custom Datasets
Mouse Recombinant Inbred Panels Adult Male BXD RI Whole Brain Affymetrix Mouse 430 v2 32
4-7 Precompiled Datasets,
Custom Datasets
Mouse Recombinant Inbred Panels Adult Male LXS RI Whole Brain Affymetrix Mouse Exon Array 61
4-6 Precompiled Datasets,
Custom Datasets
Mouse Selected Lines Adult Male 7 pairs Whole Brain Affymetrix Mouse 430 v2 7
4-6 Custom Datasets
Mouse Genetically Modified Adult Male 8 pairs multiple Affymetrix Mouse 430 v2 8 pairs
3-6 Custom Datasets
Mouse LXS progenitors Adult Male Whole Brain RNA-Seq of total RNA(Illumina) 2
3/strain (70M reads/sample) Genome/Transcriptome Browser